9.2
Editor’s Rating:
Best Overall
Cliniko: Appointments
Cliniko
  • Comprehensive practice management solution
  • Streamlined appointment scheduling
  • Comprehensive practice management solution
9.0
Editor’s Rating:
Runner-Up
Lytec: Scheduler
Lytec
  • Specialty-specific billing templates
  • Powerful reporting and analytics
  • Powerful reporting and analytics
8.9
Editor’s Rating:
Also Great
NueMD: Patient File
NueMD
  • Customizable electronic health records
  • Easy-to-use patient portal
  • Customizable electronic health records

HIPAA compliant accounting software provides audit trail capabilities for protected health information (PHI), sets user permissions, and includes a Business Associate Agreement (BAA) from a vendor which guarantees compliance with HIPAA standards. To maintain HIPAA compliance in an accounting system, it needs to adhere to HIPAA rules for handling PHI and withstand a 3rd party audit for adherence to HHS’s OCR audit protocol.

Many software programs can be used in a compliant manner. By definition, any software that avoids HIPAA violations is technically HIPAA compliant. There is no governing body that will officially stamp a software as being HIPAA compliant.

That being said, there are some commonly used accounting software used in medical offices that do a great job at keeping you HIPAA compliant–and we’ve reviewed them for you!

    1 Cliniko

    Cliniko is a comprehensive practice management solution that offers robust accounting features alongside appointment scheduling and patient management tools. It stands out as an exceptional option for HIPAA complaint accounting due to its comprehensive suite of features tailored to the healthcare industry.

    One major strength of Cliniko is strong encryption and data security measures. This ensures compliance and protects sensitive patient information in accordance with HIPAA regulations.

    Beyond accounting, Cliniko integrates appointment scheduling and patient management tools–enabling healthcare providers to streamline their admin tasks and focus on delivering quality care.

    Users praise Cliniko’s intuitive interface, responsive support team, and seamless integrations with other healthcare software. Along with an intuitive user interface that simplifies the learning curve for staff members, Cliniko is our top choice for healthcare providers seeking a HIPAA compliant accounting software that simplifies practice management and elevates patient care.

    Best Overall:
    Cliniko

    Cliniko: Appointments
    Cliniko: Health Records
    Cliniko: Transactions
    Cliniko: Reporting
    Cliniko: Business Management
    What We Like
    Comprehensive practice management solution
    Streamlined appointment scheduling
    Comprehensive practice management solution
    What We Don’t Like
    SMS messages are an additional fee
    Only supports basic e-prescription functionality
    Overview
    Price Range: $$
    Starting Price: $45/month
    Client OS: Web
    Deployment: Cloud Hosted

    2 Lytec

    Lytec works great for HIPAA compliant accounting while operating fully as a medical billing and practice management software. Catering to a wide range of medical specialties, this options becomes a versatile choice for healthcare providers of all sizes.

    The software’s HIPAA compliant features include specialty-specific billing templates, robust encryption, and customizable access controls. This streamlines the billing process by addressing the nuances of various medical disciplines–enhancing efficiency and minimizing errors in your practice’s financial management. It also ensures you can confidently rely on Lytec to product your patient’s data.

    Lytec’s user-friendly interface and exceptional support team make it a popular choice among healthcare providers, which is why we recommend it.

    Runner Up:
    Lytec

    Lytec: Scheduler
    Lytec: Billing
    Lytec: Mobile Patient Intake
    Lytec: Patient Demographics
    Lytec: ICD-10 Mapping
    Lytec: Day Sheet Transaction
    What We Like
    Specialty-specific billing templates
    Powerful reporting and analytics
    Powerful reporting and analytics
    Overview
    Price Range: $$
    Starting Price: $69/month
    Client OS: Web
    Deployment: Cloud Hosted

    3 NueMD

    NueMD can also operate as a fantastic choice for HIPAA compliant accounting due to it’s cloud-based electronic health records (EHR) and medical billing capabilities that prioritize ease of use and customization.

    HIPAA compliance is a core focus of NueMD, which offers strong encryption and strict access controls to protect sensitive data. This ensure sensitive patient data is protected.

    A features that stands out for NueMD is its easy-to-use patient portal, which streamlines communication and collaboration between patients and providers.

    In addition to being user-friendly, NueMD is one of the most customizable HIPAA compliant accounting solutions on the market. For example, billing reports can be customized, and account info can be accessed on-demand.

    Also Great:
    NueMD

    NueMD: Patient File
    NueMD: Check-In Activity
    NueMD: Insurance Code Selection
    NueMD: Claim Scrubbing
    NueMD: Mobile Screen
    NueMD: Patient Scheduling
    What We Like
    Customizable electronic health records
    Easy-to-use patient portal
    Customizable electronic health records
    Overview
    Client OS: Web
    Deployment: Cloud Hosted

    4 Sage Intacct

    While Sage Intacct is first and foremost a comprehensive financial management solution with no target industry in mind, the solution boasts robust accounting features and multi-dimensional reporting capabilities which can adhere to HIPAA regulations.

    By providing strict data security measures, Sage Intacct ensures the protection of sensitive patient information. Since any software that avoids HIPAA violations is technically HIPAA compliant, Sage Intacct has marketed itself as a top choice for medical practices looking to securely store protected health information (PHI).

    The biggest advantage Sage Intacct has over solutions that were built with the healthcare industry in mind is it’s powerful reporting capabilities. This lets healthcare providers get a deeper insight into their financial info by analyzing trends and identifying opportunities for improvement. For example, Sage Intacct can segment revenue by department, location, or physician–providing valuable insights for resource allocation and budgeting.

    Sage Intacct’s user experience is bolstered by its intuitive interface, responsive support team, and seamless integration with other systems.

    Also Great:
    Sage Intacct

    Sage Intacct: Purchasing
    Sage Intacct: Entities
    Sage Intacct: Order Entry
    Sage Intacct: Resource Search
    Sage Intacct: Report Center
    Sage Intacct: Financial Report Editor
    Sage Intacct: Dashboard
    What We Like
    Robust financial management features
    Multi-dimensional reporting capabilities
    Multi-dimensional reporting capabilities
    What We Don’t Like
    Budgeting and interactive reporting cost extra
    Limited non-financial functionalities
    Volume exports can be difficult
    Overview
    Price Range: $$$
    Starting Price: $8,580/year
    Client OS: Web
    Deployment: Cloud Hosted

    Applications found in HIPAA compliant accounting software will provide compliance to ensure you can provide accurate and timely medical billing. This includes end-to-end claim tracking, checks and balances, patient scheduling, insurance billing, and ICD-10 compliance.

    HIPAA compliant accounting systems are mostly used by small to mid-sized medical practices, clinics, and allied health professionals. These systems may be marketed as generic accounting systems that are HIPPA compliant, medical practice management solutions, or medical billing software. To decide which one will work best for your organization, you’ll need to decide which additional features beyond core accounting are important to you.

    What Is HIPAA Compliant Accounting Software?

    HIPAA compliant accounting software provides audit trail capabilities for protected health information (PHI), sets user permissions, and includes a Business Associate Agreement (BAA) from a vendor which guarantees compliance with HIPAA standards. To maintain HIPAA compliance in an accounting system, it needs to adhere to HIPAA rules for handling PHI and withstand a 3rd party audit for adherence to HHS’s OCR audit protocol.

    HIPAA compliant accounting software can be a medical accounting software (either on-premise or cloud-based) that was created for the healthcare industry and can handle any liabilities involved in managing protected health information. It can also be a generic accounting solution that has been successfully implemented into medical environments and has vendor-backing that reassures the ability to handle PHI in a compliant manner.

    Accounting features found in HIPAA compliant accounting software are typical with those found in standard accounting systems, such as accounts payable (AP) for buying medical supplies, accounts receivable (AR) for medical billing (billing both insurance and patients), and a general ledger to evaluate the company’s income and expenses in real-time.

    Cliniko Transactions HIPAA Compliant Accounting Software
    Some medical practice management solutions such as Cliniko operate their invoicing and expenses in a HIPAA compliant manner.

    Understanding HIPAA Compliance in Accounting Software

    The Health Insurance Portability and Accountability Act (HIPAA) is a federal law that regulates the privacy and security of patient health information. This legislation has far-reaching implications for accounting and financial management, requiring organizations to implement stringent data protection measures. Key elements of HIPAA compliance in accounting software include robust encryption, access controls, and audit trails to ensure the confidentiality, integrity, and availability of sensitive data.

    Features of HIPAA Compliant Accounting Software

    • Medical Billing: Includes claims management, handle remittances, patient payments, insurance payments, payment processing via credit card or ACH.
    • Audit Trail Management: Monitor when members log in, failed login attempts, software update history, downloads of records, password management, information accessed, what ePHI was changed and by whom, and more.
    • User Permissions: Limit the roles of specific users so that only the correct personnel have access to sensitive medical data. Make sure any data that is received, processed, or transmitted is only accessed by the correct users.
    • Accounts Payable: Invoice processing, payables approvals, and executing payments made by the organization for medical office supplies or other business expenses
    • Accounts Receivable: Manages customer debt collection. Includes customer database management, invoice creation, interest and late fee application, recurring billing support, and more.
    • General Ledger: Reports on the company’s assets, liabilities, revenue, and expenses.
    • Medical Practice Management: Includes scheduling and appointment management and tracking patient communication.
    Kareo Billing Insurance Collections HIPAA Compliant Accounting Software
    Kareo Billing can manage collections from insurance agencies.

    Benefits of HIPAA Compliant Accounting Software

    Some of the top benefits of HIPAA compliant accounting software include:

    Meet New Regulatory Standards

    Health regulations and standards are constantly changing. On top of that, new accounting challenges may appear within your organization that leaves you curious about how you can stay compliant while still providing the financial management your practice deserves.

    You’ll want to have a strong relationship with your HIPAA compliant accounting software vendor. Anytime a new software functionality is developed or an update occurs to your accounting system, you know you’ll have a dependable person you can rely on to explain how it affects your compliance concerns.

    Medisoft Transaction Entry HIPAA Compliant Accounting Software
    Software such as Mckesson Medisoft are developed to meet regulatory standards in recording transactions.

    Stay Within The HITECH Act Guidelines

    The Health Information Technology for Economic and Clinical Health (HITECH) Act was signed into law back in 2009 after the American Recovery and Reinvestment Act of 2009. In the health industry, the Recovery Act, or ARRA, works as a stimulus package to invest in infrastructure. Its purpose is to promote the use of technology, which led to many health organizations looking to improve their current EHR systems.

    The goal of HITECH is to promote meaningful use, which in part established some rules and regulations:

    • It set up four categories of violations
    • It set up four tiers of penalty amounts that increase with each violation
    • It capped the maximum penalty at $1.5M for all violations of an identical provision

    In terms of HIPAA compliant accounting software, HITECH sets forth punishment that organizations can face for wilful neglect when it comes to handling sensitive medical information. Many organizations look to make sure they are HIPAA compliant to avoid having to deal with any imposition of penalties as laid out from the HITECH Act.

    Sage Intacct Financial Report Editor HIPAA Compliant Accounting Software
    Some industry-neutral accounting software such as Sage Intacct have value added resellers that are specialized in implementing in a healthcare setting.

    HIPAA Compliant Accounting Software vs. Medical Billing Software

    In the medical community, there is much debate as to whether you should pursue a HIPAA compliant accounting software, or go with a medical practice management software that includes medical billing as a primary feature. Some software professionals argue that any confidential patient information relevant to HIPAA should not be stored in accounting software, and even go as far as to suggest using specialized software developed specifically for medical billing.

    Without a dedicated accounting system tied into your medical practice management tool, standard accounting workflows may be difficult to accomplish at your organization. Health offices need to bill both insurance agencies and the patient, or even collect co-pays with cash in hand. All of your patient information can be stored in practice management solution, but how do we easily transfer their billing info into the accounting program? This situation can lead to many cases of duplicate entry which can be a loss of time for your organization.

    Many software programs can be used in a compliant manner. By definition, any software that avoids HIPAA violations is technically HIPAA compliant. There is no governing body that will officially stamp a software as being HIPAA compliant. Whether the software is marketed as HIPAA compliant accounting software or as medical billing software, you can rest easy knowing they are providing you with the same functionality.

    You’ll want to make sure your accounting software provider is a covered entity, which means they are handling your ePHI in a compliant manner. This means any invoice you are sending out to your patients or the insurance companies will not be in any sort of violation.

    Is QuickBooks HIPAA Compliant?

    While QuickBooks Online does provide adequate online security on par with accounting industry standards, it is not compliant with HIPAA standards for privacy.

    Many smaller medical practices may find comfort in the familiarity, ease-of-use, and inexpensive price of QuickBooks. When it comes to patient billing and refunds, it’s natural to want to use your core accounting program of QuickBooks. However, patient names, addresses, and medical record numbers are PHI and should not be used within QuickBooks.

    While QBO can do invoicing, it was not designed to handle medical billing. Things like insurance invoices, cash payouts, deductibles, and co-pays are best used by your HIPAA compliant accounting software or medical billing solution.

    Can QuickBooks Online Be Used At All In My Medical Office?

    If you are creating an invoice for a customer that includes their name, address, and account number with a non-HIPAA compliant cloud-based solution, that can be considered to be violating HIPAA regulations via federal law. There are workarounds that can prevent you from facing HIPAA violations, which include:

    • Using a unique identifier for a patient: Rather than using the medical record number or their account number, you can use a unique customer ID. Your staff will have to do a bit of extra work to match the unique customer ID with their medical record number, but as long as anything considered PHI is not recorded in QuickBooks, you won’t be in violation of HIPAA.
    • Avoid account numbers altogether: If you are printing a refund check or an invoice that will be mailed to your patient, you can simply choose to include their name and address. The issue isn’t even about the information that is on the invoice or refund check. The issue lies in what information is stored digitally in your QuickBooks program itself. As long as no PHI is stored in the program (mainly their medical record numbers) then you won’t be in violation.
    • Summarize your revenue: By using sales summary receipts or invoices to record revenue by service, by the insurance company, or by patient type, as long as you avoid using any PHI you are free to categorize this information into QuickBooks Online.

    While you may not be able to look up patient records and check their personal care history in QuickBooks Online, you can still monitor the ongoing financial performance of your clinic on a month-to-month or year-to-year basis. You can break down revenue that is brought in from insurance companies, cash-paying patients, and monitor expenses that were specifically for performing treatments.

    The bottom line is while it is possible to use QuickBooks Online in your medical practice, patient health information must be de-identified and protected.

    What Does My Medical Practice Need?

    No matter what size your healthcare organization may be, you’ll want to make sure you have the right set of functionalities to meet your most pressing needs.

    • Small medical practices will want to be able to handle their medical billing, have notifications for patients that are late on payments, track which suppliers require payment, and monitor the contact attempts to collect on these debts (or pay on your own debts). Usually, a system with only one-user license is sufficient if you will only have one accountant or bookkeeper accessing the software.
    • Mid-sized medical practices will want to look into software that lets you set user permissions. These practices likely have more users needing access to the software, so you will want to limit what type of access they have and the information they can readily view. With increased users in the system, you’ll also want a quality audit trail that records log-in times, changes made to files, who made these changes, etc. In the case of any information breach, you should be able to track down any involved individuals.
    • Large medical practices may need to integrate with electronic health record systems (EHR software) or look into fully integrated hospital management software to ensure they have all of their functionality under one solution. This can limit the exchange of information between programs and ensure all of your data is secure within one system.

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