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The Best Small Business Payroll Software

Get the best small business payroll software for your business. Compare product reviews, pricing below. Read our buyer's guide for more help.

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  • Buyer’s Guide
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Best
Overall
OnPay Screenshot
OnPay
Low monthly price
Easy to use
Web-based
Learn More
Best for
Accounting
Wave Screenshot
Wave
Accounting features are free
New design is easy to use
Mobile app
Learn More
Best for
Non-Accountants
Patriot Software Screenshot
Patriot Software
100% online
Printable W-2s
Unlimited 1099 and 1096s
Learn More
Best
Human Resources
Gusto Screenshot
Gusto
Strong support network
Employee self-service
Includes benefits administration
Learn More
Best for
Online
SurePayroll Screenshot
SurePayroll
Accessible anywhere, anytime
Includes payroll taxes
Guarantees accuracy
Learn More

Payroll software will help you regularly and accurately pay your employees in full and on-time. As a small business, you need an affordable payroll software to calculate wages, file taxes, and pay employees.

With so many options out there, narrow down your search based on what you need.

Best Overall:
OnPay

★★★★★
★★★★★
(3)

Dashboard
Run Payroll
PTO Tracking
Offer Letter
What We Like
Low monthly price
Easy to use
Web-based
What We Don’t Like
Lengthy setup
Overview
Price Range: $$
Starting Price: $36/month
Client OS: Web

OnPay is a payroll software designed just for small businesses. This powerful runs payroll, handles employment taxes, and even offers basic HR solutions. Run payroll in a matter of minutes, even when calculating tips, reimbursements, and bonuses.

The software is completely web-based and can even be accessed on mobile phones and tablets.

Best for Accounting:
Wave

★★★★★
★★★★★
(5)

Dashboard
New Invoice
Products and Services
Receipts
New Estimate
Available Reports
What We Like
Accounting features are free
New design is easy to use
Mobile app
What We Don’t Like
Payroll costs extra
Overview
Price Range: $
Client OS: Web, iOS, Android

Wave is Wave is an accounting software with payroll applications created with small businesses in mind. The software lets you track income and expenses, organize your financials with bank reconciliation and receipt scanning, and create professional looking invoices. Payroll services are $20 per month plus $4 per employee.

Best for Non-Accountants:
Patriot Software

★★★★★
★★★★★
(1)

Patriot Software Run Payroll
Patriot Software Payroll
What We Like
100% online
Printable W-2s
Create & print unlimited 1099 and 1096s
What We Don’t Like
No mobile app
Overview
Price Range: $$
Starting Price: $8/month
Client OS: Windows

Patriot Software is an online accounting and payroll software solution for small businesses. The solution allows businesses to track money and pay employees with ease. Online payroll capability allows for basic payroll handling, or gives the option for payroll services that will cover all aspects of filing and depositing taxes.

Best Human Resources:
Gusto

★★★★★
★★★★★
(4)

Gusto Track Vacation and Sick Time
Gusto Adding New Employee
Gusto Run Payroll
Gusto Dashboard
What We Like
Strong support network
Employee self-service
Includes benefits administration
What We Don’t Like
Limited time-off options
Overview
Price Range: $$
Starting Price: $45/month
Client OS:

Gusto is one of the most widely used online payroll options that lets users log in from anywhere using a web-browser or mobile device. It also includes additional HR features such as onboarding, benefits management, and time tracking with paid time off. It's payroll capabilities include deductions and filings, direct deposits, W-2s, and 1099s.

Best for Online:
SurePayroll


Overview
Available Reports
What We Like
Accessible anywhere, anytime
Includes payroll taxes
Guarantees accuracy
What We Don’t Like
Employee access can be difficult
Overview
Price Range: $$
Starting Price: $34/month
Client OS: Web

SurePayroll is the online alternative to ADP and Paychex. Offered is a full-service payroll solution you can access anywhere, anytime. Just visit one Website every pay period to enter payroll information--SurePayroll takes care of everything else, including payroll taxes and paying your employees.

All Products

No products found
OnPay Screenshot

OnPay

★★★★★
★★★★★
(3)
OnPay is a small business payroll software that runs payroll, handles employment taxes, and handles basic HR tasks. Payroll can be ran in minutes and only requires you to input hours, tips, reimbursements, and bonuses. The software is completely web-based…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$36/month
Client OS
Web
Deployment
Cloud Hosted
Gusto Screenshot

Gusto

★★★★★
★★★★★
(4)
Gusto is an all-in-one HR, payroll, and benefits software solution used by over 100,000 small businesses. The software lets you seamlessly run payroll, manage insurance benefits & retirement contributions, track time & PTO, and manage employee schedules…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$45/month
Client OS
Deployment
Cloud Hosted
SurePayroll Screenshot

SurePayroll

SurePayroll is the online alternative to ADP and Paychex. Offered is a full-service payroll solution you can access anywhere, anytime. Just visit one Web site every pay period to enter payroll information-SurePayroll takes care of everything else…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$34/month
Client OS
Web
Deployment
Cloud Hosted
Intuit QuickBooks Payroll Basic Screenshot

Intuit QuickBooks Payroll Basic

Pay employees in QuickBooks, and work with your accountant on payroll tax filings with Payroll Basic. and Set up payroll easily with our simple step-by-step guide. Create paychecks with a few clicks; and Print checks yourself or use our Direct Deposit…
Starting Price
$39/month
Client OS
Windows
Deployment
Cloud Hosted
Square Payroll Screenshot

Square Payroll

Square Payroll is an online software for small businesses. This all-in-one solution works with every type of business to track employee hours, calulate salaries, and cover benefits. And you can also run payroll from your device with the Square Payroll…
Starting Price
$34/month
Client OS
Web
Deployment
Cloud Hosted
Patriot Software Screenshot

Patriot Software

★★★★★
★★★★★
(1)
Patriot Software is an online accounting and payroll software solution for small businesses. The solution allows businesses to track money and pay employees with ease. The online accounting is designed to be used by the non-accountant. The package lets…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$8/month
Client OS
Windows
Deployment
Cloud Hosted
Workful Screenshot

Workful

Workful is an all-in-one payroll and employee management software for small businesses. This cloud-based solution covers payroll, employees, and time tracking. All three sync automatically to manage your employees’ time clocks, time off requests, and…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$30/month
Client OS
Web
Deployment
Cloud Hosted
Wave Screenshot

Wave

★★★★★
★★★★★
(5)
Wave is a free accounting software created with small businesses in mind. The software lets you track income and expenses, organize your financials with bank reconciliation and receipt scanning, and create professional looking invoices—all for free! Wave…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Client OS
Web, iOS, Android
Deployment
Cloud Hosted
ADP Payroll Solutions Screenshot

ADP Payroll Solutions

★★★★★
★★★★★
(1)
ADP Payroll Solutions provides better experience with HR and payroll in a modern, easy to use, all-in-one platform. Trusted by more than 900,000 clients, ADP has unmatched global experience in HR, payroll and compliance. From simple tools to full-service…
Client OS
Web, iOS, Android
Deployment
Cloud Hosted
Paychex Flex Screenshot

Paychex Flex

★★★★★
★★★★★
(3)
Paychex Flex is an online payroll software that provides quick and easy payroll processing. Paychex Flex is a cloud-based platform providing an integrated suite of services that manages payroll, reporting, and employee data. There is time and attendance…
Client OS
Web, iOS, Android
Deployment
Cloud Hosted
Zenefits Screenshot

Zenefits

★★★★★
★★★★★
(2)
Zenefits is an HR software providing an integrated approach to HR, payroll, benefits, and time and scheduling. Zenefits helps streamline all things related to human capital management with their easy to use solution. Zenefits has the HR tools your…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$8/employee/month
Client OS
Mac, Windows, iOS, Android
Deployment
Cloud Hosted
Viventium Payroll Screenshot

Viventium Payroll

★★★★★
★★★★★
(1)
Viventium payroll software is online so you can access services from anywhere at any time. Your employees can have access to pay history and paid time off balances. They can make changes to their contact information, direct deposit accounts, and request…
Client OS
Web, iOS, Android
Deployment
Cloud Hosted
Paylocity Screenshot

Paylocity

Paylocity is an online payroll and HCM solution. The single web-based platform helps you enhance employee engagement and makes running your business and it’s employees much easier. The solution can streamline payroll processes, automate daily HR tasks…
Client OS
Web, iOS, Android
Deployment
Cloud Hosted
Wagepoint Screenshot

Wagepoint

Wagepoint is an onine payroll software for small businesses to pay employees and independent contractors. Wagepoint also helps keep your business compliant with any payroll regulations in your jurisdiction. Wagepoint helps streamline the payroll…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$20/month
Client OS
Web
Deployment
Cloud Hosted
Xero Screenshot

Xero

★★★★★
★★★★★
(3)
Xero is an online accounting solution for small businesses that is known for its ease of use. See your cashflow in real-time with online billing, banking and accounting. Just login anytime, anywhere. Free trial, pay nothing until you’re ready; No setup…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$13/month
Client OS
Web
Deployment
Cloud Hosted
Paycor Screenshot

Paycor

★★★★★
★★★★★
(3)
Paycor is a human capital management (HCM) software that provides cloud-based onboarding, HR, payroll, and timekeeping software capabilities. Paycor’s HCM platform modernizes every aspect of manage the people in your business, from the initial…
Client OS
Web
Deployment
Cloud Hosted
Sage HRMS Screenshot

Sage HRMS

★★★★★
★★★★★
(2)
Sage Human Resource Management System (HRMS) is a complete on-premise tool that helps you improve HR policies and make smart decisions for your small to medium-sized business. Sage HRMS helps you elevate the level of service your HR department provides…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$1,600 (perpetual license)
Client OS
Mac, Windows
Deployment
On-Premises
ProfitBooks Screenshot

ProfitBooks

★★★★★
★★★★★
(1)
ProfitBooks is a simple and intuitive accounting software built for small and growing businesses. With ProfitBooks, you can create invoices, manage taxes, track inventory, and much more with no accounting knowledge. Purchase Management; Manage Sales…
Client OS
Mac, Web, Windows, iOS, Android
Deployment
Cloud Hosted
MYOB Screenshot

MYOB

★★★★★
★★★★★
(2)
MYOB is a full-service online accounting system. It can handle accounts receivable/payable, payroll, time sheets, and all other accounting needs. But it also has powerful tools to consolidate multiple locations into one dashboard, track foreign…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$10/month
Client OS
Mac, Web, Windows, iOS, Android
Deployment
Cloud Hosted
Clear Books Screenshot

Clear Books

★★★★★
★★★★★
(1)
Clear Books is an accessible, online accounting software built for small businesses, contractors, and freelancers. This easy-to-use online accounting software is designed for UK-based small businesses, contractors, freelancers, and sole trade. Easily…
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$12/month
Client OS
Mac, Web, Windows, iOS, Android
Deployment
Cloud Hosted

We searched and searched, but we couldn’t find any products in our database that match your criteria. Perhaps our team of software experts can help? They’d be happy to provide a list of free small business payroll software recommendations that meet your exact requirements.

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Lexi Wood
Last updated on April 29th, 2020
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Small Business Payroll Software Buyer’s Guide

Small businesses have different needs from multinational corporations with thousands of employees. While big companies may have entire departments dedicated to managing payroll, chances are your small business doesn't have the same resources. In order to handle your employee compensation, automate the process with payroll software specifically designed for small businesses like yours.

  • What is Small Business Payroll Software?
  • Key Features
  • Best Benefits
  • Software Pricing

What is Small Business Payroll Software?

Managing your payroll requires an intricate knowledge of wage calculation and local tax codes, for withholding and deductions. Small business payroll software provides payroll solutions for automating these employee compensation processes.

Payroll software for small businesses is made to minimize the time you spend on calculating employee payments during each pay period. Tools streamline the process by automatically calculating wages based on time worked and then deduct funds based on tax withholdings. Your employees can get accurate paychecks and you can spend less time focusing on payroll.

Payroll software sometimes overlaps with human resource services since it tracks employee hours and benefits. However, since many small businesses do not have dedicated HR departments, they often need to use independent payroll solutions to manage employee compensation.

OnPay Software
Use OnPay for your small business payroll needs.

Features of Small Business Payroll Software

  • Salary and wage calculation: Determine employee paycheck amounts based on hours worked, specified salary and wage rates, and any other contributing factors like bonuses or incentives
  • Check printing and direct deposit: Batch print employee paychecks and/or deposit payroll funds directly to your employees
  • Pay stub records: Generate pay stubs to document employee hours worked, wage rate, salary earned, overtime, tax withholdings and deductions
  • Deductions management: Correctly withhold employee funds for taxes, legal garnishments, health insurance premiums, retirement contributions and benefits, etc.
  • Time and overtime tracking: Let employees report in real-time or after-the-fact; calculate overtime compensation for employees based on hours worked
  • Electronic payroll tax filing: Submit accurate tax documentation digitally for faster results and reduced errors
  • Certified payroll: Use 3rd party verification of wage payments to confirm payments are in accordance with prevailing wage standards
Gusto Software
Run payroll with Gusto.

Benefits of Payroll Software for Small Businesses

Small business owners can improve their payroll services by using the right software. Here are just a few of the benefits small businesses find when they use custom payroll software:

Full Service Payroll

Enjoy a full service payroll software no matter how small your business is. Unlike general accounting software, payroll features target every possible issue with employee compensation. Popular solutions include time tracking features to help you record worker hours and then calculate their correct wages. There are tools to find and fill out the correct local and federal tax forms based on where your business is located.

By automating your payroll system, you can stay focused on your day-to-day tasks without worrying about how you're paying your employees.

Easy Direct Deposit

Payroll processing takes time, and one way to increase your speed is to offer direct deposit. However, many small businesses feel they can't offer direct deposit to their employees because of the additional transfer expenses. Fortunately, payroll software makes it easy to ensure the approved funds are in the right bank account and ready for pay day.

The more payroll options you have, the happier your employees will be. Some workers prefer instant access to their paycheck from direct deposit. Others prefer paper checks in order to do their banking in person. By using payroll software, you can continue to offer physical checks and pay stubs when necessary.

Keeping your payroll options open can also make it easier to manage special payments. For example, if an employee has accrued significant overtime, you can cut a bonus check directly rather than adjust their direct deposit in order to keep your payroll records accurate.

Instant Paycheck Auditing

Using a small business payroll software lets you better manage employee pay records. Instead of digging through physical paper trails, you can generate payroll reports on a regular basis. If you ever need to audit, simply using your software tools to create weekly, monthly, quarterly, and annual reports on your payroll runs.

Several small business payroll software tools are accessible on mobile apps. You can review employee paychecks while on the go. And employee self-service portals allow your workers to check their pay stubs online whenever they want. This gives you and your employees more opportunities to identify potential discrepancies with wages or withholding.

Accurate Tax Records

No matter how small your business, doing your taxes without a team of accountants can be a daunting task. Fortunately, software can streamline the process for your small business. After auditing your payroll, you can accurately report your taxes to the state and federal agencies. Payroll software automatically calculates deductions, withholding, and other information necessary for assembling your tax documents.

SurePayroll
Generate payroll reports with SurePayroll.

Manage Employee Benefits and Garnishments

Running payroll can be complicated by several factors. Are there different pay rates based on each department? Do your employees have retirement savings accounts? Are there annual company bonuses? Payroll software includes benefits administration so you can manage all types of employee compensation plans. Evenly distribute the holiday bonus through direct deposit or cut checks to share at the annual end-of-year party.

On the opposite end of the spectrum, payroll plans can even cover workers' compensation for employees who are not on your regular payroll due to on-the-job incidents. And if an employee has a court order to repay their debts, you can keep records of wage garnishment to prove compliance to debtors. Saving this unique payroll data can come in handy when going over your tax calculations.

Small Business Payroll Software Pricing

Online payroll software is intended to help small businesses save on the time it takes to run payroll, cut checks, and calculate taxes. In order to meet the budget of your business, most payroll solutions bill on a per employee/month basis, meaning the bigger you get, the more you'll pay. SaaS rates begin at $8 per month on a per employee basis. The base price may increase if you require special customer support, training, or implementation. More expensive plans with additional finance or HR features approach $45 per month per user. One-time implementations for a perpetual license are around $1,600.

Patriot Software
Complete payroll in record time with Patriot Software.
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