Software Connect logo Software Connect logo
Categories Reviews Research
Categories
All Roundups →
Reviews
All Reviews →
Research
All Research →
About Us
About Us →

The Best Small Business Payroll Software

Get the best software for your business. Compare product reviews, pricing below.

  • Editor’s Picks
  • All Products
  • Buyer’s Guide
Talk with a software advisor
Talk with an advisor
Get a free consultation from an independent expert.
Or, call toll-free: (800) 827-1151
Talk with a software advisor
Talk with an advisor
←
→
Best
Overall
OnPay Screenshot
OnPay
Low monthly price
Easy to use
Web-based
Learn More
Best for
Accounting
Wave Screenshot
Wave
Accounting features are free
New design is easy to use
Mobile app
Learn More
Best for
Non-Accountants
Patriot Software Screenshot
Patriot Software
100% online
Printable W-2s
Unlimited 1099 and 1096s
Learn More
Best
Human Resources
Gusto Screenshot
Gusto
Strong support network
Employee self-service
Includes benefits administration
Learn More
Best for
Online
SurePayroll Screenshot
SurePayroll
Accessible anywhere, anytime
Includes payroll taxes
Guarantees accuracy
Learn More

Payroll software will help you regularly and accurately pay your employees in full and on-time. As a small business, you need an affordable payroll software to calculate wages, file taxes, and pay employees.

With so many options out there, narrow down your search based on what you need.

Best Overall:
OnPay

★★★★★
★★★★★
(3)

OnPay: Employee Payroll
OnPay: Reports Overview
OnPay: Payroll Pay Items
OnPay: Payroll Register Report
OnPay: Dashboard
OnPay: Run Payroll
OnPay: PTO Tracking
OnPay: Offer Letter
What We Like
Low monthly price
Easy to use
Web-based
What We Don’t Like
Lengthy setup
For US companies only
Lengthy setup
Overview
Price Range: $$
Starting Price: $46/month
Client OS: Web
Deployment: Cloud Hosted

OnPay is a payroll software designed just for small businesses. This powerful runs payroll, handles employment taxes, and even offers basic HR solutions. Run payroll in a matter of minutes, even when calculating tips, reimbursements, and bonuses.

The software is completely web-based and can even be accessed on mobile phones and tablets.

Best for Accounting:
Wave

★★★★★
★★★★★
(5)

Wave: Balance Sheet
Wave: Add an Estimate
Wave: Recurring Invoice
Wave: Edit a Product or Service
Wave: Transactions
What We Like
Accounting features are free
New design is easy to use
Mobile app
What We Don’t Like
Payroll costs extra
Collecting online payments is “pay-per-use”
Payroll costs extra
Overview
Price Range: $
Starting Price: Free
Client OS: iOS, Android, Web
Deployment: Cloud Hosted

Wave is Wave is an accounting software with payroll applications created with small businesses in mind. The software lets you track income and expenses, organize your financials with bank reconciliation and receipt scanning, and create professional looking invoices. Payroll services are $20 per month plus $4 per employee.

Best for Non-Accountants:
Patriot Software

★★★★★
★★★★★
(1)

Patriot Software: Dashboard
Patriot Software: Enter and Pay Bills
Patriot Software: Products and Services
Patriot Software: Invoices
Patriot Software: Transactions Viewing
Patriot Software: General Ledger
Patriot Software: Patriot Software Run Payroll
Patriot Software: Patriot Software Payroll
What We Like
100% online
Printable W-2s
Create & print unlimited 1099 and 1096s
What We Don’t Like
No mobile app
Difficult to upload 3rd party time sheets
Limited inventory management
Overview
Price Range: $$
Starting Price: $20/month
Client OS: Windows
Deployment: Cloud Hosted

Patriot Software is an online accounting and payroll software solution for small businesses. The solution allows businesses to track money and pay employees with ease. Online payroll capability allows for basic payroll handling, or gives the option for payroll services that will cover all aspects of filing and depositing taxes.

Best Human Resources:
Gusto

★★★★★
★★★★★
(4)

Gusto: Dashboard
Gusto: Payroll Processing
Gusto: Expenses
Gusto: Employee Payroll Editing Page
Gusto: Team Insights Page
Gusto: Gusto Track Vacation and Sick Time
Gusto: Gusto Adding New Employee
What We Like
Strong support network
Employee self-service
Includes benefits administration
What We Don’t Like
Limited time-off options
Limited time-off options
Per-person pricing model can get expensive
Overview
Price Range: $$
Starting Price: $40/month
Deployment: Cloud Hosted

Gusto is one of the most widely used online payroll options that lets users log in from anywhere using a web-browser or mobile device. It also includes additional HR features such as onboarding, benefits management, and time tracking with paid time off. It’s payroll capabilities include deductions and filings, direct deposits, W-2s, and 1099s.

Best for Online:
SurePayroll


SurePayroll: Payroll Entering
SurePayroll: Dashboard
SurePayroll: Approval
SurePayroll: Reports
SurePayroll: Company Handbook
SurePayroll: Overview
SurePayroll: Available Reports
What We Like
Accessible anywhere, anytime
Includes payroll taxes
Guarantees accuracy
What We Don’t Like
Employee access can be difficult
Employee access can be difficult
Exact pricing details unavailable without a developer quote
Overview
Price Range: $$
Starting Price: $24/month
Client OS: Web
Deployment: Cloud Hosted

SurePayroll is the online alternative to ADP and Paychex. Offered is a full-service payroll solution you can access anywhere, anytime. Just visit one Website every pay period to enter payroll information–SurePayroll takes care of everything else, including payroll taxes and paying your employees.

All Products

No products found
OnPay Screenshot

OnPay

★★★★★
★★★★★
(3)
OnPay is a small business payroll software that runs payroll, manages employment taxes, and handles basic HR tasks. Payroll can be ran in minutes and only requires users to input hours, tips, reimbursements, and bonuses. The software is completely web-based and can even be accessed on mobile phones and tablets.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$46/month
Client OS
Web
Deployment
Cloud Hosted
Gusto Screenshot

Gusto

★★★★★
★★★★★
(4)
Gusto is an online payroll and HR administration platform tailored primarily for startups and small businesses. The software simplifies payroll processing, benefits administration, and offers features like charitable giving, financial wellness tools, and a wallet for employee financial management.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$40/month
Deployment
Cloud Hosted
Wave Screenshot

Wave

★★★★★
★★★★★
(5)
The Wave app is a highly popular accounting solution among freelancers and small businesses. It’s a free cloud-hosted software that allows you to track income and expenses, perform bank reconciliation, capture and organize receipts, and create custom invoices.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
Free
Client OS
iOS, Android, Web
Deployment
Cloud Hosted
Patriot Software Screenshot

Patriot Software

★★★★★
★★★★★
(1)
Patriot Software is a cloud-hosted 1099 and accounting software that handles basic payroll. Its accounting module supports vendor payments, invoicing, payment recording, and the tracking of bank cash deposits and withdrawals.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$20/month
Client OS
Windows
Deployment
Cloud Hosted
SurePayroll Screenshot

SurePayroll

SurePayroll is a cloud-based payroll service designed for small businesses. It offers features like tax calculation and filing, payroll processing, direct deposits, and integrations with various accounting and time-tracking tools. Key highlights include its user-friendly interface, mobile app functionality, and a comprehensive suite of HR tools, making it a versatile choice for small business payroll needs.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$24/month
Client OS
Web
Deployment
Cloud Hosted
Intuit QuickBooks Payroll Basic Screenshot

Intuit QuickBooks Payroll Basic

Pay employees in QuickBooks, and work with your accountant on payroll tax filings with Payroll Basic. and Set up payroll easily with our simple step-by-step guide. Create paychecks with a few clicks; and Print checks yourself or use our Direct Deposit (additional fees apply). and Payroll Basic software automatically calculates federal and state payroll taxes, and withholds them from paychecks. and No tax forms are included with Payroll Basic, but you can generate reports to easily work with your
Starting Price
$39/month
Client OS
Windows
Square Payroll Screenshot

Square Payroll

Square Payroll is an online software for small businesses. This all-in-one solution works with every type of business to track employee hours, calulate salaries, and cover benefits. And you can also run payroll from your device with the Square Payroll App. Pay your team from anywhere and never miss payroll again. Pay employees and contractors; Pay salaried and hourly employees; Offer health and other benefits; Give employees online accounts; Track employee hours; Import timecards and tips; Pay
Starting Price
$34/month
Client OS
Web
Deployment
Cloud Hosted
Workful Screenshot

Workful

Workful is an all-in-one payroll and employee management software for small businesses. This cloud-based solution covers payroll, employees, and time tracking. All three sync automatically to manage your employees’ time clocks, time off requests, and reimbursement requests. Unlimited payroll runs; Multiple pay rates; Built-in time tracking; State/federal tax forms; QuickBooks integration; W-2 and 1099 preparation; Auto calculates overtime; Auto calculates time accrual; PTO tracking; Customized
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$30/month
Client OS
Web
Deployment
Cloud Hosted
ADP Payroll Solutions Screenshot

ADP Payroll Solutions

★★★★★
★★★★★
(2)
ADP Payroll Solutions provides better experience with HR and payroll in a modern, easy to use, all-in-one platform. Trusted by more than 900,000 clients, ADP has unmatched global experience in HR, payroll and compliance. From simple tools to full-service outsourcing, ADP offers a variety of solutions in accordance with your company size including: [[toc]] @youtube Automated payroll; Payroll tax filing; Deductions management; Employee schedule management; Compliance management solutions; Employee
Client OS
iOS, Android, Web
Deployment
Cloud Hosted
Paychex Flex Screenshot

Paychex Flex

★★★★★
★★★★★
(3)
Paychex Flex is an online payroll software with an integrated solution for payroll, benefits administration, workforce management, and HR services. The software provides built-in safeguards, payroll tax calculations, a free mobile app, and reporting.
Client OS
iOS, Android, Web
Deployment
Cloud Hosted
TriNet HR Software Screenshot

TriNet HR Software

★★★★★
★★★★★
(2)
TriNet, formerly Zenefits, is an HR software. The platform allows businesses to manage the entire employee lifecycle, from recruiting to offboarding, and provides tools for HR compliance, people operations, and performance management. Key features include payroll, benefits enrollment, and employee onboarding. TriNet provides employees access to premium benefits typically available to larger organizations.
Client OS
Windows, macOS, iOS, Android
Deployment
Cloud Hosted
Viventium Payroll Screenshot

Viventium Payroll

★★★★★
★★★★★
(1)
Viventium Payroll is a payroll software designed primarily for the healthcare industry but also suitable for other sectors. It offers industry-specific solutions, electronic onboarding, and extensive calculation capabilities. The platform provides a comprehensive payroll management system that’s easy to navigate, with features like direct deposits, employee self-service portals, and customer support via phone, email, and live chat.
Client OS
iOS, Android, Web
Deployment
Cloud Hosted
Paylocity Screenshot

Paylocity

Paylocity is an online payroll and HCM solution. The single web-based platform can streamline payroll processes, automate daily HR tasks, improve the accuracy of time tracking, and more. Additionally, it offers a unified dashboard for handling HRIS, payroll, timekeeping, and admin tasks from a single location. Paylocity also integrates with various HR, business, or accounting systems.
Client OS
iOS, Android, Web
Deployment
Cloud Hosted
Wagepoint Screenshot

Wagepoint

Wagepoint is an onine payroll software for small businesses to pay employees and independent contractors. Wagepoint also helps keep your business compliant with any payroll regulations in your jurisdiction. Wagepoint helps streamline the payroll obligation and compliance work to make your accounting process easier. Direct deposit; Wage calculation; Federal, State, and Local Taxes; 1099s, W2s, and W3s; Wage detail reports; New hire reporting; Additional deductions; Contractor payments; Additional
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$20/month
Client OS
Web
Deployment
Cloud Hosted
Xero Screenshot

Xero

★★★★★
★★★★★
(3)
A contender against QuickBooks Online, Xero is a popular solution for its user-friendly interface, affordability, and unlimited users per subscription. It’s a cloud-based, double-entry accounting software that offers bank reconciliation, financial reporting, and basic invoicing and billing.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$20/month
Client OS
Web
Deployment
Cloud Hosted
Paycor Screenshot

Paycor

★★★★★
★★★★★
(3)
Paycor is a human capital management (HCM) software that provides cloud-based onboarding, HR, payroll, and timekeeping software capabilities. Paycor’s HCM platform modernizes every aspect of managing the people of a business, from the initial recruitment, retainment, and paying them via payroll. Paycor’s HCM software makes managing day-to-day operations easier via applicant tracking, reducing administrative tasks for open enrollment and benefits, to keeping an eye on payroll costs. It has modules offering custom reports, on-demand HR features, and timekeeping utilities.
Client OS
Web
Deployment
Cloud Hosted
Sage HRMS Screenshot

Sage HRMS

★★★★★
★★★★★
(2)
Sage HRMS, formerly Abra, is an on-premise human resources management software. It streamlines HR processes by automating employee data management, ensuring compliance with government regulations, and providing decision support through analytics. Key features include payroll management, recruiting, compliance, time and attendance, benefits administration, paperless HR, and talent management.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$1,600 (perpetual license)
Client OS
Windows, macOS
Deployment
On-Premises
ProfitBooks Screenshot

ProfitBooks

★★★★★
★★★★★
(1)
ProfitBooks is a simple and intuitive accounting software built for small and growing businesses. With ProfitBooks, you can create invoices, manage taxes, track inventory, and much more with no accounting knowledge. Purchase Management; Manage Sales Orders; Inventory Management; Customer & Supplier Management; Multi-Currency; Create Invoices; and Payroll. ProfitBooks offers both free and paid versions. ProfitBooks is free for startups.
Client OS
Windows, macOS, iOS, Android, Web
Deployment
Cloud Hosted
MYOB Business Screenshot

MYOB Business

★★★★★
★★★★★
(2)
MYOB Business is an online accounting software designed primarily for small to medium-sized businesses. It includes features like payroll management, GST handling, invoice generation, and expense tracking. MYOB Business also facilitates efficient tax and superannuation calculations. MYOB can integrate with various business systems like QuickBooks and Xero.
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$15/month
Client OS
Windows, macOS, iOS, Android, Web
Deployment
Cloud Hosted
Clear Books Screenshot

Clear Books

★★★★★
★★★★★
(1)
Clear Books is an accessible, online accounting software built for small businesses, contractors, and freelancers. This easy-to-use online accounting software is designed for UK-based small businesses, contractors, freelancers, and sole trade. Easily create and send invoices, track bills and expenses, prepare taxes, share access with certain individuals, and more. @youtube Invoice and Quote Generator; Bill and Receipt Tracking; Bank Feeds and Uploads; Reporting Tools; Dividends Tracker; Project
Price Range
   $     $     $     $     $   
   $     $     $     $     $   
Starting Price
$12/month
Client OS
Windows, macOS, iOS, Android, Web
Deployment
Cloud Hosted

We searched and searched, but we couldn’t find any products in our database that match your criteria. Perhaps our team of software experts can help? They’d be happy to provide a list of free the best small business payroll software recommendations that meet your exact requirements.

Sort by 
Learn about sort options…
Filter by User Rating
Filter by Price Range
Learn about price ranges…
Filter by Deployment
Filter by Client OS
Lexi Wood
Last updated on September 21st, 2022
Facebook
LinkedIn
Twitter
Buyer’s Guide

Small businesses have different needs from multinational corporations with thousands of employees. While big companies may have entire departments dedicated to managing payroll, chances are your small business doesn’t have the same resources. In order to handle your employee compensation, automate the process with payroll software specifically designed for small businesses like yours.

  • What is Small Business Payroll Software?
  • Key Features
  • Best Benefits
  • Software Pricing

What is Small Business Payroll Software?

Managing your payroll requires an intricate knowledge of wage calculation and local tax codes, for withholding and deductions. Small business payroll software provides payroll solutions for automating these employee compensation processes.

Payroll software for small businesses is made to minimize the time you spend on calculating employee payments during each pay period. Tools streamline the process by automatically calculating wages based on time worked and then deduct funds based on tax withholdings. Your employees can get accurate paychecks and you can spend less time focusing on payroll.

Payroll software sometimes overlaps with human resource services since it tracks employee hours and benefits. However, since many small businesses do not have dedicated HR departments, they often need to use independent payroll solutions to manage employee compensation.

OnPay Software
Use OnPay for your small business payroll needs.

Features of Small Business Payroll Software

  • Salary and wage calculation: Determine employee paycheck amounts based on hours worked, specified salary and wage rates, and any other contributing factors like bonuses or incentives
  • Check printing and direct deposit: Batch print employee paychecks and/or deposit payroll funds directly to your employees
  • Pay stub records: Generate pay stubs to document employee hours worked, wage rate, salary earned, overtime, tax withholdings and deductions
  • Deductions management: Correctly withhold employee funds for taxes, legal garnishments, health insurance premiums, retirement contributions and benefits, etc.
  • Time and overtime tracking: Let employees report in real-time or after-the-fact; calculate overtime compensation for employees based on hours worked
  • Electronic payroll tax filing: Submit accurate tax documentation digitally for faster results and reduced errors
  • Certified payroll: Use 3rd party verification of wage payments to confirm payments are in accordance with prevailing wage standards
Gusto Software
Run payroll with Gusto.

Benefits of Payroll Software for Small Businesses

Small business owners can improve their payroll services by using the right software. Here are just a few of the benefits small businesses find when they use custom payroll software:

Full Service Payroll

Enjoy a full service payroll software no matter how small your business is. Unlike general accounting software, payroll features target every possible issue with employee compensation. Popular solutions include time tracking features to help you record worker hours and then calculate their correct wages. There are tools to find and fill out the correct local and federal tax forms based on where your business is located.

By automating your payroll system, you can stay focused on your day-to-day tasks without worrying about how you’re paying your employees.

Easy Direct Deposit

Payroll processing takes time, and one way to increase your speed is to offer direct deposit. However, many small businesses feel they can’t offer direct deposit to their employees because of the additional transfer expenses. Fortunately, payroll software makes it easy to ensure the approved funds are in the right bank account and ready for pay day.

The more payroll options you have, the happier your employees will be. Some workers prefer instant access to their paycheck from direct deposit. Others prefer paper checks in order to do their banking in person. By using payroll software, you can continue to offer physical checks and pay stubs when necessary.

Keeping your payroll options open can also make it easier to manage special payments. For example, if an employee has accrued significant overtime, you can cut a bonus check directly rather than adjust their direct deposit in order to keep your payroll records accurate.

Instant Paycheck Auditing

Using a small business payroll software lets you better manage employee pay records. Instead of digging through physical paper trails, you can generate payroll reports on a regular basis. If you ever need to audit, simply using your software tools to create weekly, monthly, quarterly, and annual reports on your payroll runs.

Several small business payroll software tools are accessible on mobile apps. You can review employee paychecks while on the go. And employee self-service portals allow your workers to check their pay stubs online whenever they want. This gives you and your employees more opportunities to identify potential discrepancies with wages or withholding.

Accurate Tax Records

No matter how small your business, doing your taxes without a team of accountants can be a daunting task. Fortunately, software can streamline the process for your small business. After auditing your payroll, you can accurately report your taxes to the state and federal agencies. Payroll software automatically calculates deductions, withholding, and other information necessary for assembling your tax documents.

SurePayroll
Generate payroll reports with SurePayroll.

Manage Employee Benefits and Garnishments

Running payroll can be complicated by several factors. Are there different pay rates based on each department? Do your employees have retirement savings accounts? Are there annual company bonuses? Payroll software includes benefits administration so you can manage all types of employee compensation plans. Evenly distribute the holiday bonus through direct deposit or cut checks to share at the annual end-of-year party.

On the opposite end of the spectrum, payroll plans can even cover workers’ compensation for employees who are not on your regular payroll due to on-the-job incidents. And if an employee has a court order to repay their debts, you can keep records of wage garnishment to prove compliance to debtors. Saving this unique payroll data can come in handy when going over your tax calculations.

Small Business Payroll Software Pricing

Online payroll software is intended to help small businesses save on the time it takes to run payroll, cut checks, and calculate taxes. In order to meet the budget of your business, most payroll solutions bill on a per employee/month basis, meaning the bigger you get, the more you’ll pay. SaaS rates begin at $8 per month on a per employee basis. The base price may increase if you require special customer support, training, or implementation. More expensive plans with additional finance or HR features approach $45 per month per user. One-time implementations for a perpetual license are around $1,600.

Patriot Software
Complete payroll in record time with Patriot Software.
About Us
Software Reviews
Our Methodology
Affiliate Disclosure
Terms of Use
Privacy Policy
For Vendors

© 1997-2025 Software Connect

(800) 827-1151
[email protected]
Milwaukee, Wisconsin
Roundups
Best Accounting Software
Best CMMS Software
Best Construction Software
Best ERP Software
Best MRP Software
Best Property Management Software
Reviews
ECI M1 Review
Hippo CMMS Review
NetSuite ERP Review
Power BI Review
QuickBooks Online Review
Tableau Review
Comparisons
Acumatica vs. NetSuite
Appfolio vs. Buildium
NetSuite vs. SAP
Power BI vs. Tableau
QuickBooks vs. FreshBooks
Sage 300 vs. Sage 50